Detailed information of SNP:
|
SNP ID:
sf0135645992(Gbrowse)
Chromosome: chr01 Position: 35645992 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 76.49% | 23.51% |
| All Indica | 788 | 65.48% | 34.52% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 368 | 57.34% | 42.66% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 207 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135645992 | C->T | INTERGENIC | None |