Detailed information of SNP:
|
SNP ID:
sf0135646570(Gbrowse)
Chromosome: chr01 Position: 35646570 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.48% | 26.52% |
| All Indica | 798 | 60.90% | 39.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135646570 | C->T | INTERGENIC | None |