Detailed information of SNP:
|
SNP ID:
sf0135704019(Gbrowse)
Chromosome: chr01 Position: 35704019 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.34% | 35.66% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.6) | INTRON |
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.4) | INTRON |
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.3) | INTRON |
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.2) | INTRON |
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.1) | INTRON |
| sf0135704019 | T->C | LOC_Os01g61710(LOC_Os01g61710.5) | INTRON |