Detailed information of SNP:
|
SNP ID:
sf0135715092(Gbrowse)
Chromosome: chr01 Position: 35715092 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 70.11% | 29.89% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 22.74% | 77.26% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 24.48% | 75.52% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135715092 | T->C | INTERGENIC | None |