Detailed information of SNP:
|
SNP ID:
sf0135793671(Gbrowse)
Chromosome: chr01 Position: 35793671 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 78.75% | 21.25% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 475 | 42.32% | 57.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 44.03% | 55.97% |
| Tropical Japonica | 91 | 26.37% | 73.63% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135793671 | T->G | INTERGENIC | None |