Detailed information of SNP:
|
SNP ID:
sf0135936489(Gbrowse)
Chromosome: chr01 Position: 35936489 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 50.22% | 49.78% |
| All Indica | 762 | 83.07% | 16.93% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 361 | 80.06% | 19.94% |
| Indica II | 201 | 91.04% | 8.96% |
| Indica Intermediate | 200 | 80.50% | 19.50% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135936489 | C->T | LOC_Os01g62090(LOC_Os01g62090.1) | INTRON |