Detailed information of SNP:
|
SNP ID:
sf0135956800(Gbrowse)
Chromosome: chr01 Position: 35956800 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 58.98% | 41.02% |
| All Indica | 791 | 91.40% | 8.60% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 88.92% | 11.08% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 2 | 50.00% | 50.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0135956800 | A->G | INTERGENIC | None |