Detailed information of SNP:
|
SNP ID:
sf0136062110(Gbrowse)
Chromosome: chr01 Position: 36062110 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 53.33% | 46.67% |
| All Indica | 793 | 25.09% | 74.91% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 211 | 8.06% | 91.94% |
| Indica Intermediate | 208 | 53.85% | 46.15% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136062110 | G->A | INTERGENIC | None |