Detailed information of SNP:
|
SNP ID:
sf0136066716(Gbrowse)
Chromosome: chr01 Position: 36066716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 90.75% | 9.25% |
| All Indica | 775 | 85.94% | 14.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 92.35% | 7.65% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 196 | 61.22% | 38.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136066716 | C->T | INTERGENIC | None |