Detailed information of SNP:
|
SNP ID:
sf0136110581(Gbrowse)
Chromosome: chr01 Position: 36110581 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 90.91% | 9.09% |
| All Indica | 768 | 85.29% | 14.71% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 49 | 91.84% | 8.16% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 185 | 63.78% | 36.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 5 | 40.00% | 60.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136110581 | G->A | INTERGENIC | None |