Detailed information of SNP:
|
SNP ID:
sf0136149480(Gbrowse)
Chromosome: chr01 Position: 36149480 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 85.69% | 14.31% |
| All Indica | 695 | 74.39% | 25.61% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 324 | 88.89% | 11.11% |
| Indica II | 168 | 35.12% | 64.88% |
| Indica Intermediate | 203 | 83.74% | 16.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136149480 | T->A | INTERGENIC | None |