Detailed information of SNP:
|
SNP ID:
sf0136190650(Gbrowse)
Chromosome: chr01 Position: 36190650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 97.33% | 2.67% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 465 | 92.26% | 7.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 91.48% | 8.52% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136190650 | C->T | INTERGENIC | None |