Detailed information of SNP:
|
SNP ID:
sf0136198191(Gbrowse)
Chromosome: chr01 Position: 36198191 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 92.04% | 7.96% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 437 | 75.51% | 24.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 288 | 75.35% | 24.65% |
| Tropical Japonica | 88 | 65.91% | 34.09% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136198191 | T->C | INTERGENIC | None |