Detailed information of SNP:
|
SNP ID:
sf0136201673(Gbrowse)
Chromosome: chr01 Position: 36201673 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.58% | 47.42% |
| All Indica | 798 | 84.71% | 15.29% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 54.76% | 45.24% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136201673 | G->A | INTERGENIC | None |