Detailed information of SNP:
|
SNP ID:
sf0136250603(Gbrowse)
Chromosome: chr01 Position: 36250603 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136250603 | A->G | INTERGENIC | None |