Detailed information of SNP:
|
SNP ID:
sf0136271175(Gbrowse)
Chromosome: chr01 Position: 36271175 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 72.04% | 27.96% |
| All Indica | 728 | 51.37% | 48.63% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 338 | 50.59% | 49.41% |
| Indica II | 185 | 29.73% | 70.27% |
| Indica Intermediate | 205 | 72.20% | 27.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136271175 | G->A | INTERGENIC | None |