Detailed information of SNP:
|
SNP ID:
sf0136276316(Gbrowse)
Chromosome: chr01 Position: 36276316 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 798 | 20.93% | 79.07% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 12.80% | 87.20% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136276316 | C->T | INTERGENIC | None |