Detailed information of SNP:
|
SNP ID:
sf0136298039(Gbrowse)
Chromosome: chr01 Position: 36298039 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 97.89% | 2.11% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 406 | 93.35% | 6.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 282 | 92.20% | 7.80% |
| Tropical Japonica | 72 | 98.61% | 1.39% |
| Japonica Intermediate | 52 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136298039 | G->T | INTERGENIC | None |