Detailed information of SNP:
|
SNP ID:
sf0136325187(Gbrowse)
Chromosome: chr01 Position: 36325187 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 86.78% | 13.22% |
| All Indica | 798 | 80.58% | 19.42% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 57.89% | 42.11% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136325187 | G->A | LOC_Os01g62750(LOC_Os01g62750.1) | INTRON |