Detailed information of SNP:
|
SNP ID:
sf0136419752(Gbrowse)
Chromosome: chr01 Position: 36419752 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136419752 | T->A | LOC_Os01g62890(LOC_Os01g62890.2) | INTRON |
| sf0136419752 | T->A | LOC_Os01g62890(LOC_Os01g62890.1) | INTRON |