Detailed information of SNP:
|
SNP ID:
sf0136509830(Gbrowse)
Chromosome: chr01 Position: 36509830 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.42% | 5.58% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136509830 | G->A | INTERGENIC | None |