Detailed information of SNP:
|
SNP ID:
sf0136575906(Gbrowse)
Chromosome: chr01 Position: 36575906 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 50.69% | 49.31% |
| All Indica | 774 | 18.73% | 81.27% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 46 | 50.00% | 50.00% |
| Indica I | 363 | 12.12% | 87.88% |
| Indica II | 209 | 28.71% | 71.29% |
| Indica Intermediate | 202 | 20.30% | 79.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136575906 | A->G | LOC_Os01g63120(LOC_Os01g63120.1) | INTRON |