Detailed information of SNP:
|
SNP ID:
sf0136577901(Gbrowse)
Chromosome: chr01 Position: 36577901 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 96.07% | 3.93% |
| All Indica | 782 | 96.16% | 3.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 202 | 92.57% | 7.43% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136577901 | G->T | LOC_Os01g63120(LOC_Os01g63120.1) | Synonymous |