Detailed information of SNP:
|
SNP ID:
sf0136578141(Gbrowse)
Chromosome: chr01 Position: 36578141 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 96.34% | 3.66% |
| All Indica | 776 | 94.20% | 5.80% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 192 | 80.73% | 19.27% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136578141 | G->A | LOC_Os01g63120(LOC_Os01g63120.1) | Synonymous |