Detailed information of SNP:
|
SNP ID:
sf0136578644(Gbrowse)
Chromosome: chr01 Position: 36578644 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 93.47% | 6.53% |
| All Indica | 788 | 93.27% | 6.73% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 55 | 40.00% | 60.00% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 204 | 81.86% | 18.14% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136578644 | G->T | LOC_Os01g63120(LOC_Os01g63120.1) | Non-Synonymous SNP |