Detailed information of SNP:
|
SNP ID:
sf0136592880(Gbrowse)
Chromosome: chr01 Position: 36592880 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 798 | 20.93% | 79.07% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 29.95% | 70.05% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136592880 | A->G | LOC_Os01g63150(LOC_Os01g63150.1) | INTRON |