Detailed information of SNP:
|
SNP ID:
sf0136606383(Gbrowse)
Chromosome: chr01 Position: 36606383 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1321 | 96.21% | 3.79% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 402 | 92.29% | 7.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 277 | 98.56% | 1.44% |
| Tropical Japonica | 67 | 82.09% | 17.91% |
| Japonica Intermediate | 58 | 74.14% | 25.86% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136606383 | G->A | LOC_Os01g63160(LOC_Os01g63160.1) | INTRON |