Detailed information of SNP:
|
SNP ID:
sf0136681887(Gbrowse)
Chromosome: chr01 Position: 36681887 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 96.43% | 3.57% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 423 | 92.91% | 7.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 289 | 98.62% | 1.38% |
| Tropical Japonica | 78 | 87.18% | 12.82% |
| Japonica Intermediate | 56 | 71.43% | 28.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136681887 | G->A | INTERGENIC | None |