Detailed information of SNP:
|
SNP ID:
sf0136767293(Gbrowse)
Chromosome: chr01 Position: 36767293 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 66.59% | 33.41% |
| All Indica | 754 | 41.25% | 58.75% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 45.79% | 54.21% |
| Indica II | 207 | 19.81% | 80.19% |
| Indica Intermediate | 191 | 56.02% | 43.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136767293 | T->G | INTERGENIC | None |