Detailed information of SNP:
|
SNP ID:
sf0136872976(Gbrowse)
Chromosome: chr01 Position: 36872976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 54.38% | 45.62% |
| All Indica | 794 | 27.71% | 72.29% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 372 | 35.22% | 64.78% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 209 | 27.75% | 72.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136872976 | G->A | INTERGENIC | None |