Detailed information of SNP:
|
SNP ID:
sf0136901480(Gbrowse)
Chromosome: chr01 Position: 36901480 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 58.39% | 41.61% |
| All Indica | 749 | 34.18% | 65.82% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 357 | 30.81% | 69.19% |
| Indica II | 198 | 37.88% | 62.12% |
| Indica Intermediate | 194 | 36.60% | 63.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136901480 | C->G | LOC_Os01g63630(LOC_Os01g63630.1) | INTRON |