Detailed information of SNP:
|
SNP ID:
sf0136901565(Gbrowse)
Chromosome: chr01 Position: 36901565 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1347 | 55.83% | 44.17% |
| All Indica | 741 | 26.99% | 73.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 57 | 31.58% | 68.42% |
| Indica I | 352 | 25.85% | 74.15% |
| Indica II | 191 | 28.80% | 71.20% |
| Indica Intermediate | 198 | 27.27% | 72.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136901565 | T->C | LOC_Os01g63630(LOC_Os01g63630.1) | INTRON |