Detailed information of SNP:
|
SNP ID:
sf0136978116(Gbrowse)
Chromosome: chr01 Position: 36978116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 97.36% | 2.64% |
| All Indica | 784 | 95.54% | 4.46% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 96.48% | 3.52% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 207 | 94.69% | 5.31% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0136978116 | G->A | LOC_Os01g63740(LOC_Os01g63740.1) | Non-Synonymous SNP |