Detailed information of SNP:
|
SNP ID:
sf0137065930(Gbrowse)
Chromosome: chr01 Position: 37065930 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 73.77% | 26.23% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 479 | 29.85% | 70.15% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 320 | 37.19% | 62.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 65 | 26.15% | 73.85% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137065930 | G->C | LOC_Os01g63880(LOC_Os01g63880.1) | Non-Synonymous SNP |