Detailed information of SNP:
|
SNP ID:
sf0137194790(Gbrowse)
Chromosome: chr01 Position: 37194790 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 94.69% | 5.31% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 84.93% | 15.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 78.72% | 21.28% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137194790 | A->G | LOC_Os01g64030(LOC_Os01g64030.2) | Synonymous |
| sf0137194790 | A->G | LOC_Os01g64030(LOC_Os01g64030.1) | Synonymous |
| sf0137194790 | A->G | LOC_Os01g64030(LOC_Os01g64030.3) | Synonymous |
| sf0137194790 | A->G | LOC_Os01g64030(LOC_Os01g64030.4) | Synonymous |