Detailed information of SNP:
|
SNP ID:
sf0137229019(Gbrowse)
Chromosome: chr01 Position: 37229019 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 55.76% | 44.24% |
| All Indica | 764 | 24.35% | 75.65% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 351 | 10.26% | 89.74% |
| Indica II | 206 | 25.73% | 74.27% |
| Indica Intermediate | 207 | 46.86% | 53.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137229019 | C->T | INTERGENIC | None |