Detailed information of SNP:
|
SNP ID:
sf0137242476(Gbrowse)
Chromosome: chr01 Position: 37242476 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.07% | 38.93% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137242476 | A->G | INTERGENIC | None |