Detailed information of SNP:
|
SNP ID:
sf0137254955(Gbrowse)
Chromosome: chr01 Position: 37254955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 98.01% | 1.99% |
| All Indica | 738 | 96.48% | 3.52% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 335 | 95.22% | 4.78% |
| Indica II | 198 | 98.99% | 1.01% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137254955 | G->A | INTERGENIC | None |