Detailed information of SNP:
|
SNP ID:
sf0137295140(Gbrowse)
Chromosome: chr01 Position: 37295140 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 83.77% | 16.23% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 428 | 50.00% | 50.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 46.58% | 53.42% |
| Tropical Japonica | 82 | 50.00% | 50.00% |
| Japonica Intermediate | 54 | 68.52% | 31.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137295140 | C->T | LOC_Os01g64220(LOC_Os01g64220.1) | INTRON |