Detailed information of SNP:
|
SNP ID:
sf0137337293(Gbrowse)
Chromosome: chr01 Position: 37337293 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 99.04% | 0.96% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 427 | 96.96% | 3.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 98.26% | 1.74% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 55 | 87.27% | 12.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137337293 | C->T | LOC_Os01g64320(LOC_Os01g64320.1) | Non-Synonymous SNP |