Detailed information of SNP:
|
SNP ID:
sf0137350271(Gbrowse)
Chromosome: chr01 Position: 37350271 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.58% | 44.42% |
| All Indica | 798 | 93.98% | 6.02% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137350271 | A->G | LOC_Os01g64330(LOC_Os01g64330.1) | UTR_5_PRIME |