Detailed information of SNP:
|
SNP ID:
sf0137413607(Gbrowse)
Chromosome: chr01 Position: 37413607 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1308 | 71.56% | 28.44% |
| All Indica | 693 | 48.20% | 51.80% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 302 | 42.05% | 57.95% |
| Indica II | 200 | 34.00% | 66.00% |
| Indica Intermediate | 191 | 72.77% | 27.23% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137413607 | C->T | INTERGENIC | None |