Detailed information of SNP:
|
SNP ID:
sf0137431532(Gbrowse)
Chromosome: chr01 Position: 37431532 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 67.79% | 32.21% |
| All Indica | 688 | 40.99% | 59.01% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 296 | 33.45% | 66.55% |
| Indica II | 200 | 28.00% | 72.00% |
| Indica Intermediate | 192 | 66.15% | 33.85% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137431532 | G->A | LOC_Os01g64510(LOC_Os01g64510.1) | Non-Synonymous SNP |