Detailed information of SNP:
|
SNP ID:
sf0137431626(Gbrowse)
Chromosome: chr01 Position: 37431626 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 95.69% | 4.31% |
| All Indica | 754 | 92.44% | 7.56% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 349 | 87.97% | 12.03% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 198 | 94.44% | 5.56% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137431626 | G->A | LOC_Os01g64510(LOC_Os01g64510.1) | Non-Synonymous SNP |