Detailed information of SNP:
|
SNP ID:
sf0137486563(Gbrowse)
Chromosome: chr01 Position: 37486563 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 55.11% | 44.89% |
| All Indica | 771 | 94.68% | 5.32% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 360 | 91.39% | 8.61% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 205 | 98.05% | 1.95% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137486563 | A->G | INTERGENIC | None |