Detailed information of SNP:
|
SNP ID:
sf0137579244(Gbrowse)
Chromosome: chr01 Position: 37579244 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 91.89% | 8.11% |
| All Indica | 791 | 87.99% | 12.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 32 | 56.25% | 43.75% |
| Indica I | 369 | 86.72% | 13.28% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137579244 | C->T | INTERGENIC | None |