Detailed information of SNP:
|
SNP ID:
sf0137638069(Gbrowse)
Chromosome: chr01 Position: 37638069 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 82.85% | 17.15% |
| All Indica | 791 | 70.67% | 29.33% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.35% | 9.65% |
| Indica II | 209 | 31.58% | 68.42% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137638069 | G->A | LOC_Os01g64830(LOC_Os01g64830.1) | INTRON |