Detailed information of SNP:
|
SNP ID:
sf0137650031(Gbrowse)
Chromosome: chr01 Position: 37650031 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 84.38% | 15.62% |
| All Indica | 788 | 73.35% | 26.65% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 90.59% | 9.41% |
| Indica II | 207 | 39.61% | 60.39% |
| Indica Intermediate | 209 | 76.08% | 23.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137650031 | T->C | INTERGENIC | None |