Detailed information of SNP:
|
SNP ID:
sf0137797101(Gbrowse)
Chromosome: chr01 Position: 37797101 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.34% | 44.66% |
| All Indica | 797 | 25.22% | 74.78% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 212 | 19.81% | 80.19% |
| Indica Intermediate | 210 | 18.10% | 81.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137797101 | G->A | INTERGENIC | None |