Detailed information of SNP:
|
SNP ID:
sf0137798448(Gbrowse)
Chromosome: chr01 Position: 37798448 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 80.69% | 19.31% |
| All Indica | 795 | 74.09% | 25.91% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0137798448 | T->C | INTERGENIC | None |